PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_67705g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 367aa    MW: 41304.1 Da    PI: 8.0363
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_67705g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
    MA_67705g0010 14 RGPWSPEEDSKLKEYIEKYGTGaNWISLPQKVGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding409.3e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia++++ gRt++++k++w++
    MA_67705g0010  69 GGFSEEEDNIICSLYLSIGSR-WSMIAARLP-GRTDNDIKNHWNT 111
                      569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.253966IPR017930Myb domain
SuperFamilySSF466892.08E-2711109IPR009057Homeodomain-like
SMARTSM007171.5E-121364IPR001005SANT/Myb domain
PfamPF002492.3E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-241569IPR009057Homeodomain-like
CDDcd001671.56E-101662No hitNo description
SMARTSM007177.6E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129417.57667117IPR017930Myb domain
PfamPF002498.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRAPCCDKD NVKRGPWSPE EDSKLKEYIE KYGTGANWIS LPQKVGLRRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLYLSIGSRW SMIAARLPGR TDNDIKNHWN TRLKKKLLGK  120
SKDHQTHRLA AAKQESNEVQ SYATSEAISS SNIYGPQQAH HLNIDMDVAY SNFFPGIISQ  180
KLEQNCGSII TGSSLSSETA IFPLNPQQVQ LDQELSDHNF SRRKLLQWPE GTVVGHHSNN  240
NMTMISSSSP IQASNCFNSS LMQHVNAHNQ YTSDAASQIS CGTSPSPVHL YPRHILKNHI  300
KQEQPPAAFV QNNNSQFSPG SPWPEGKNYE SAWMNTFNVE NNNMGAYGFS TELNDLLFYN  360
NDSLLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-147D5ABB6_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-77myb domain protein 68